The best way to Update the database table through a pyspark job - dataframe

I have a spark job that gets data from multiple sources and aggregates into one table. The job should update the table only if there is new data.
One approach I could think of is to fetch the data from the existing table, and compare with the new data that comes in. The comparison happens in the spark layer.
I was wondering if there is any better way to compare, that can improve the comparison performance.
Please let me know if anyone has a suggestion on this.
Thanks much in advance.

One approach I could think of is to fetch the data from the existing
table, and compare with the new data that comes in
IMHO entire data compare to load new data is not performant.
Option 1:
Instead you can create google-bigquery partition table and create a partition column to load the data and also while loading new data you can check whether the new data has same partition column.
Hitting partition level data in hive or bigquery is more useful/efficient than selecting entire data and comparing in spark.
Same is applicable for hive as well.
see this Creating partitioned tables
or
Creating and using integer range partitioned tables
Option 2:
Another alternative is with GOOGLE bigquery we have merge statement, if your requirement is to merge the data with out comparision, then you can go ahead with MERGE statement .. see doc link below
A MERGE statement is a DML statement that can combine INSERT, UPDATE, and DELETE operations into a single statement and perform the operations atomically.
Using this, We can get performance improvement because all three operations (INSERT, UPDATE, and DELETE) are performed in one pass. We do not need to write an individual statement to update changes in the target table.

There are many ways this problem can be solved, one of the less expensive, performant and scalable way is to use a datastore on the file system to determine true new data.
As data comes in for the 1st time write it to 2 places - database and to a file (say in s3). If data is already on the database then you need to initialize the local/s3 file with table data.
As data comes in 2nd time onwards, check if it is new based its presence on local/s3 file.
Mark delta data as new or updated. Export this to database as insert or update.
As time goes by this file will get bigger and bigger. Define a date range beyond which updated data won’t be coming. Regularly truncate this file to keep data within that time range.
You can also bucket and partition this data. You can use deltalake to maintain it too.
One downside is that whenever database is updated this file may need to be updated based on relevant data is being Changed or not. You can maintain a marker on the database table to signify sync date. Index that column too. Read changed records based on this column and update the file/deltalake.
This way your sparl app will be less dependent on a database. The database operations are not very scalable so keeping them away from critical path is better

Shouldnt you have a last update time in you DB? The approach you are using doesnt sound scalable so if you had a way to set update time to each row in the table it will solve the problem.

Related

Advice on changing the partition field for dynamic BigQuery tables

I am dealing with the following issue: I have a number of tables imported into BigQuery from an external source via AirByte with _airbyte_emitted_at as the default setting for partition field.
As this default choice for a partition field is not very lucrative, the need to change the partition field naturally presents itself. I am aware of the method available for changing partitions of existing tables, by means of a CREATE TABLE FROM SELECT * statement, however the new tables thus created - essentially copies of the original ones, with modified partition fields - will be mere static snapshots and no longer dynamically update, as the originals do each time new data is recorded in the external source.
Given such a context, what would the experienced members of this forum suggest as a solution to the problem?
Being that I am a relative beginner in such matters, I apologise in advance for any potential lack of clarity. I look forward to improving the clarity, should there be any suggestions to do so from interested readers & users of this forum.
I can think of 2 approaches to overcome this.
Approach 1 :
You can use Scheduled queries to copy the newly inserted rows to your 2nd table. You have to write the query in such a way that it will always select the latest rows from your main table and once you have that you can use Insert Into statement to append the rows in your 2nd table.
Since Schedule queries run at specific times the only drawback will be the the 2nd table will not get updated immediately whenever there is a new row in the main table, it will get the latest data whenever the Scheduled Query runs.
If you do not wish to have the latest data always in your 2nd table then this approach is the easier one to achieve.
Approach 2 :
You can trigger Cloud Actions for BigQuery events such as Insert, delete, update etc. Whenever a new row gets inserted in your main table ,using Cloud Run Actions you can insert that new data in your 2nd table.
You can follow this article , here a detailed solution has been given.
If you wish to have the latest data always in your 2nd table then this would be a good way to do so.

Keeping BigQuery table data up-to-date

This is probably incorrect use case for BigQuery but I have following problem: I need to periodically update Big Query table. Update should be "atomic" in a sense that clients which read data should either use only old version of data or completely new version of data. The only solution I have now is to use date partitions. The problem with this solution is that clients which just need to read up to date data should know about partitions and get data only from certain partitions. Every time I want to make a query I would have first to figure out which partition to use and only then select from the table. Is there any way to improve this? Ideally I would like solution to be easy and transparent for clients who read data.
You didn't mention the size of your update, I can only give some general guideline.
Most BigQuery updates, including single DML (INSERT/UPDATE/DELETE/MERGE) and single load job, are atomic. Your reader reads either old data or new data.
Lacking multi-statement transaction right now, if you do have updates which doesn't fit into single load job, the solution is:
Load update into a staging table, after all loads finished
Use single INSERT or MERGE to merge updates from staging table to primary data table
The drawback: scanning staging table is not for free
Update: since you have multiple tables to update atomically, there is a tiny trick which may be helpful.
Assuming for each table that you need an update, there is a ActivePartition column as partition key, you may have a table with only one row.
CREATE TABLE ActivePartition (active DATE);
Each time after loading, you set ActivePartition.active to a new active date, then your user use a script:
DECLARE active DATE DEFAULT (SELECT active FROM ActivePartition);
-- Actual query
SELECT ... FROM dataTable WHERE ActivePartition = active

Truncate and insert new content into table with the least amount of interruption

Twice a day, I run a heavy query and save the results (40MBs worth of rows) to a table.
I truncate this results table before inserting the new results such that it only ever has the latest query's results in it.
The problem, is that while the update to the table is written, there is technically no data and/or a lock. When that is the case, anyone interacting with the site could experience an interruption. I haven't experienced this yet, but I am looking to mitigate this in the future.
What is the best way to remedy this? Is it proper to write the new results to a table named results_pending, then drop the results table and rename results_pending to results?
Two methods come to mind. One is to swap partitions for the table. To be honest, I haven't done this in SQL Server, but it should work at a low level.
I would normally have all access go through a view. Then, I would create the new day's data in a separate table -- and change the view to point to the new table. The view change is close to "atomic". Well, actually, there is a small period of time when the view might not be available.
Then, at your leisure you can drop the old version of the table.
TRUNCATE is a DDL operation which causes problems like this. If you are using snapshot isolation with row versioning and want users to either see the old or new data then use a single transaction to DELETE the old records and INSERT the new data.
Another option if a lot of the data doesn't actually change is to UPDATE / INSERT / DELETE only those records that need it and leave unchanged records alone.

Truncate table partitions dynamically

We have a large U-SQL table containing simple time series data. The table is partitioned per day. Whenever a new batch of data is received, we need to insert new time series data points AND update any previously received data points with a new value, in case the new batch contains updated values for old data points.
Since we cannot perform granular UPDATEs or DELETEs with U-SQL, we wanted to simply truncate the affected partitions and insert the recalculated daily values. Our U-SQL script that does the merge, identifies which partitions need to be truncated.
Unfortunately, since we cannot create loops in U-SQL, there seems to be no way to dynamically truncate the identified partitions. A suggestion I found elsewhere, was to hand the truncation of partitions over to a PowerShell script, but I would really like to keep everything inside the same U-SQL script, to avoid storing and retrieving temporary rowsets any more than necessary.
I thought about using a custom C# function, but it doesn't seem like the U-SQL SDK allows C# functions to access/modify database metadata. Are there any other options available?
The SDK allows you to query meta data, but not to manipulate the objects.
Another option is that you write a script to generate the script based on the data and then run the generated script. It still means that you write two scripts, but you don't really have to store temporary data.
Do you know how many partitions you may need to update going back?

Need help designing a DB - for a non DBA

I'm using Google's Cloud Storage & BigQuery. I am not a DBA, I am a programmer. I hope this question is generic enough to help others too.
We've been collecting data from a lot of sources and will soon start collecting data real-time. Currently, each source goes to an independent table. As new data comes in we append it into the corresponding existing table.
Our data analysis requires each record to have a a timestamp. However our source data files are too big to edit before we add them to cloud storage (4+ GB of textual data/file). As far as I know there is no way to append a timestamp column to each row before bringing them in BigQuery, right?
We are thus toying with the idea of creating daily tables for each source. But don't know how this will work when we have real time data coming in.
Any tips/suggestions?
Currently, there is no way to automatically add timestamps to a table, although that is a feature that we're considering.
You say your source files are too big to edit before putting in cloud storage... does that mean that the entire source file should have the same timestamp? If so, you could import to a new BigQuery table without a timestamp, then run a query that basically copies the table but adds a timestamp. For example, SELECT all,fields, CURRENT_TIMESTAMP() FROM my.temp_table (you will likely want to use allow_large_results and set a destination table for that query). If you want to get a little bit trickier, you could use the dataset.DATASET pseudo-table to get the modified time of the table, and then add it as a column to your table either in a separate query or in a JOIN. Here is how you'd use the DATASET pseudo-table to get the last modified time:
SELECT MSEC_TO_TIMESTAMP(last_modified_time) AS time
FROM [publicdata:samples.__DATASET__]
WHERE table_id = 'wikipedia'
Another alternative to consider is the BigQuery streaming API (More info here). This lets you insert single rows or groups of rows into a table just by posting them directly to bigquery. This may save you a couple of steps.
Creating daily tables is a reasonable option, depending on how you plan to query the data and how many input sources you have. If this is going to make your queries span hundreds of tables, you're likely going to see poor performance. Note that if you need timestamps because you want to limit your queries to certain dates and those dates are within the last 7 days, you can use the time range decorators (documented here).